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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11031209_11034067_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11031209 - 11034067
Intron Length:
2859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAACTTAA
5'SS Class:
major
3'SS Sequence:
CCTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCCTCCTTATTT
Flanking Amino Acid:
LKKMRSRMDEKHCSPVHYFF
Intron Amino Acid Position:
1515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
73.9
32.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.2
0.7
0.8
76.5
31.7
Minor 5ss
46.8
-0.3
2.6
57.8
41.2
Minor BPS
68.4
0.66
1.6
79.24
43.6

Associated Gene:

Gene:
CEP350
Ensembl Gene ID:
ENSAPLG00000011152
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047406
11007766 - 11053862
46097