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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11034226_11034954_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11034226 - 11034954
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CATTTAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
KLKSAGENKLDLHSEDDIKQ
Intron Amino Acid Position:
1463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
0.9
70.9
38.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
CEP350
Ensembl Gene ID:
ENSAPLG00000011152
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011644
11007766 - 11053862
46097
ENSAPLT00000047406
11007766 - 11053862
46097