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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11038288_11038652_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11038288 - 11038652
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTACCA
5'SS Class:
weak_major
3'SS Sequence:
TTTTATTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTACCAAAACC
Flanking Amino Acid:
KQLRARTDTNRKCESGAMSQ
Intron Amino Acid Position:
1161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.2
51.9
38.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.2
0.79
0.7
85.1
29.3
Minor 5ss
34.8
-1.7
2.8
41.6
44.3
Minor BPS
58
0.23
2
76.5
39.5

Associated Gene:

Gene:
CEP350
Ensembl Gene ID:
ENSAPLG00000011152
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047406
11007766 - 11053862
46097
ENSAPLT00000011644
11007766 - 11053862
46097