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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11041139_11041249_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11041139 - 11041249
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGACTGTTGAGT
Flanking Amino Acid:
RPAAGAASASGCMRFSPAGL
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
79.1
0.65
0.8
72.9
32
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
43.8
-0.4
2.2
61.45
42.4

Associated Gene:

Gene:
CEP350
Ensembl Gene ID:
ENSAPLG00000011152
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011644
11007766 - 11053862
46097
ENSAPLT00000047406
11007766 - 11053862
46097