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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11124424_11127098_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11124424 - 11127098
Intron Length:
2675

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCAGGGGAG
5'SS Class:
major
3'SS Sequence:
AAGCGCTGTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTACAG
U12 Branch Point Sequence:
GTACCCTGAGAA
Flanking Amino Acid:
WELSEWSEVGASQKPEEHAA
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
59
43.5
Major BPS
47.5
-0.1
1.6
60.7
45.9
Major PPT
48.9
-0
1.2
45.3
40.8
Minor 5ss
17.3
-3.8
4.1
28
44.1
Minor BPS
47.1
-0.2
1.8
57.75
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023321
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044199
11124351 - 11128186
3836