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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11127176_11127798_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11127176 - 11127798
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TCGATCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTCCCTCGATC
Flanking Amino Acid:
STWFTTSWSQCSKTCGAGVR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.3
0.55
0.9
68
37.5
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
57.8
0.23
1.6
67.48
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023321
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044199
11124351 - 11128186
3836