Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11131462_11132126_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11131462 - 11132126

Intron Length:

665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTTCTGATAAAA

Flanking Amino Acid:

IAVLCYCRLQYYCCKKDDSD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.3

35.8

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

74.1

0.54

0.7

68.4

25.2

Minor 5ss

32.2

-2

3.3

41.8

45.1

Minor BPS

46.1

-0.3

2.3

66.85

39.1

Associated Gene:

Gene:

FAM163A

Ensembl Gene ID:

ENSAPLG00000027703

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039342

11131060 - 11133179

2120