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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11164404_11165279_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11164404 - 11165279
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CCTAACTCAACC
Flanking Amino Acid:
MLLDSERHEEGIKSPGLGIC
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
71
0.47
0.9
62.9
39.3
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
49.8
-0
1.8
60.43
44.3

Associated Gene:

Gene:
NPHS2
Ensembl Gene ID:
ENSAPLG00000012112
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012616
11164133 - 11169882
5750