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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11165384_11166050_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11165384 - 11166050
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAG
U12 Branch Point Sequence:
TTCCCCTCCAGC
Flanking Amino Acid:
FPISVWFCMKVVREYERAIV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
41.5
-0.5
1.6
49.7
44
Major PPT
82.7
0.73
0.7
76.9
25
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
45.5
-0.3
2.2
59.94
45.2

Associated Gene:

Gene:
NPHS2
Ensembl Gene ID:
ENSAPLG00000012112
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012616
11164133 - 11169882
5750