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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11166124_11166430_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11166124 - 11166430
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCTCCACA
Flanking Amino Acid:
RLLPGRARGPGLFFFLPCLD
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.4
0.8
0.7
80.5
24.8
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
67.6
0.55
2
83.78
36.8

Associated Gene:

Gene:
NPHS2
Ensembl Gene ID:
ENSAPLG00000012112
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012616
11164133 - 11169882
5750