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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11166514_11167628_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11166514 - 11167628
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
AACATCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TCTCCCCTAACA
Flanking Amino Acid:
LKTLEIPFHQVVTKDMVTLE
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
58.7
0.22
1.2
67
38
Major PPT
70.1
0.45
0.9
66.5
39.6
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
67.9
0.56
1.7
77.88
38.5

Associated Gene:

Gene:
NPHS2
Ensembl Gene ID:
ENSAPLG00000012112
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012616
11164133 - 11169882
5750