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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11169212_11169603_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11169212 - 11169603
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
AATATTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATTT
Flanking Amino Acid:
AEAQRQAKVRVIAAEGEKAA
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
65
42.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
69.8
0.44
1
67.5
43
Minor 5ss
36.7
-1.5
3
39.2
46.1
Minor BPS
49.6
0.05
1.7
65.44
39.1

Associated Gene:

Gene:
NPHS2
Ensembl Gene ID:
ENSAPLG00000012112
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012616
11164133 - 11169882
5750