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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11180795_11183252_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11180795 - 11183252
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATGTAATTAAAG
Flanking Amino Acid:
QYNIRISGNNGTTTFLTALV
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85.7
0.8
0.7
77.7
31.1
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
48.8
-0.2
1.9
57.77
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020605
11180577 - 11189161
8585