Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11183442_11184788_R

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

11183442 - 11184788

Intron Length:

1347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAACCTGT

5'SS Class:

weak_minor

3'SS Sequence:

GAGGTGTACTTAG|T

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

TATGGAG

U12 Branch Point Sequence:

AGAGGTGTACTT

Flanking Amino Acid:

SLNKWLQYCDMKTESLKSAA

Intron Amino Acid Position:

259

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.7

0.16

1.2

54.7

45.2

Major BPS

45.9

-0.2

1.7

49.1

46.3

Major PPT

51.4

0.03

47.4

44.8

Minor 5ss

61.6

0.39

2.5

78.6

36.7

Minor BPS

34.9

-1

2.2

46.73

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012313

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020605

11180577 - 11189161

8585