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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11185630_11186229_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11185630 - 11186229
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCAGGAGGG
5'SS Class:
weak_major
3'SS Sequence:
ATATTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTGCAAATAATA
Flanking Amino Acid:
AAYDLALKVGIIDRNQLTLV
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.4
51.6
42
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
84.4
0.77
0.8
81.9
34.9
Minor 5ss
20.1
-3.4
4.2
29
43.5
Minor BPS
43
-0.5
1.9
53.31
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012824
11181025 - 11192407
11383