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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11186357_11187003_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11186357 - 11187003
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACATACTTCATT
Flanking Amino Acid:
AAMQEAEANANLLEQYRELY
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
84.5
0.78
0.7
77.4
31.3
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
50.3
0.09
1.9
68.02
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020605
11180577 - 11189161
8585