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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11187680_11188213_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11187680 - 11188213
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCATCACT
5'SS Class:
major
3'SS Sequence:
CTTTTTACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTCTTTTTACT
Flanking Amino Acid:
VERGQLLSKLRQRYVDLLKR
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
68.2
42.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.5
0.73
0.7
78.5
28.7
Minor 5ss
37.5
-1.4
2.8
51
45
Minor BPS
60.1
0.4
1.6
76.61
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012824
11181025 - 11192407
11383