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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11188028_11188198_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11188028 - 11188198
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCACCCTTA
5'SS Class:
weak_major
3'SS Sequence:
AATTAACACCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TCCTGCCTAATT
Flanking Amino Acid:
LLSKLRSSLAKANEPQLCNW
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.2
0.15
1.3
51.6
45.2
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
59.7
0.22
1
49.1
43.2
Minor 5ss
43.3
-0.7
4.2
63.4
46.3
Minor BPS
51.3
0.12
2.1
71.93
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020605
11180577 - 11189161
8585