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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11188318_11189053_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11188318 - 11189053
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGATAAA
5'SS Class:
major
3'SS Sequence:
CAATGTGCTGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTTTCTTGCATG
Flanking Amino Acid:
ELIRVTGPSQLLKAEQNIYN
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
72.6
33.8
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
47.6
-0.1
1.7
50.4
43.4
Minor 5ss
27.6
-2.6
2.9
32.2
42.5
Minor BPS
53.8
-0
2
67.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020605
11180577 - 11189161
8585