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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11188336_11189053_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11188336 - 11189053
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGATAAA
5'SS Class:
major
3'SS Sequence:
CATGTTTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTTTCTTGCATG
Flanking Amino Acid:
ELIRVTGPSQLHNVLELLKA
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
72.6
33.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
71.8
0.49
1.1
65.2
45.3
Minor 5ss
27.6
-2.6
2.9
32.2
42.5
Minor BPS
53.8
-0
2
67.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012824
11181025 - 11192407
11383