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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11189160_11191777_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11189160 - 11191777
Intron Length:
2618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTATACAAAATA
Flanking Amino Acid:
DHPVSLTGAGRKPAGRFEVI
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
73.9
0.54
1
73.1
37.3
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
45.3
-0.3
2
57.98
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012313
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012824
11181025 - 11192407
11383