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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11199289_11200449_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11199289 - 11200449
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CACCTCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCTTGTTTCACC
Flanking Amino Acid:
VLFCLFMCFGMVFNFILNDR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
73.2
0.52
0.8
64.5
36.1
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
52.9
0.07
2.2
69.26
43

Associated Gene:

Gene:
SOAT1
Ensembl Gene ID:
ENSAPLG00000012658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013231
11198263 - 11221534
23272