About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11201139_11201631_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11201139 - 11201631
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ACTGTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTGTGCTGAATT
Flanking Amino Acid:
MRFADRMFYKDWWNSTSYAN
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
74.5
0.55
1
69.7
41
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
61.5
0.44
1.9
80.61
41.6

Associated Gene:

Gene:
SOAT1
Ensembl Gene ID:
ENSAPLG00000012658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013231
11198263 - 11221534
23272