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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11206198_11208086_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11206198 - 11208086
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAACAAT
U12 Branch Point Sequence:
TGGGCCCTGAGT
Flanking Amino Acid:
TLLVDFIDEGRLVLGFDLLV
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
49.4
-0
1.3
57.1
35.8
Major PPT
81.2
0.7
0.9
77.7
36.7
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
46.4
-0.2
2.1
64.44
46

Associated Gene:

Gene:
SOAT1
Ensembl Gene ID:
ENSAPLG00000012658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013231
11198263 - 11221534
23272