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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11208674_11208760_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11208674 - 11208760
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTCTTGAAT
Flanking Amino Acid:
SCSEKELHKAKSLRAPPEHG
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
77.4
0.95
1.3
91.96
30.1

Associated Gene:

Gene:
SOAT1
Ensembl Gene ID:
ENSAPLG00000012658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013231
11198263 - 11221534
23272