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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11208910_11214197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11208910 - 11214197
Intron Length:
5288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTAAATAACT
Flanking Amino Acid:
RKMQLIAEAEQLKPVFMKEV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.8
0.53
1
73.1
37.1
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
49.7
0.06
2
74.03
42

Associated Gene:

Gene:
SOAT1
Ensembl Gene ID:
ENSAPLG00000012658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013231
11198263 - 11221534
23272