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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11214257_11221410_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11214257 - 11221410
Intron Length:
7154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGTTC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
AACTGCTAAATA
Flanking Amino Acid:
GERSFQNASNGRVDVDHVIT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
71.7
34.3
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
78.9
0.65
0.7
78
23.9
Minor 5ss
36
-1.6
3.4
46.6
43.5
Minor BPS
48.2
-0.1
2
58.31
41.9

Associated Gene:

Gene:
SOAT1
Ensembl Gene ID:
ENSAPLG00000012658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013231
11198263 - 11221534
23272