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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11260389_11269894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11260389 - 11269894
Intron Length:
9506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTGCACACAAAG
Flanking Amino Acid:
GALPSEYPPEEALHRPYGCD
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
82.9
0.74
0.8
80.5
31.5
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
41.4
-0.7
2
49.12
43.5

Associated Gene:

Gene:
ABL2
Ensembl Gene ID:
ENSAPLG00000013308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013872
11260322 - 11280722
20401