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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11266299_11269894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11266299 - 11269894
Intron Length:
3596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
GTCCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTGCACACAAAG
Flanking Amino Acid:
ASEPGVSSFTEALHRPYGCD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
82.9
0.74
0.8
80.5
31.5
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
41.4
-0.7
2
49.12
43.5

Associated Gene:

Gene:
ABL2
Ensembl Gene ID:
ENSAPLG00000013308
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031861
11266190 - 11280722
14533