About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11288601_11290503_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11288601 - 11290503
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
CTTCTGTCCACA
Flanking Amino Acid:
DYRRSIFLFLSNIGGNTINE
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
77.7
0.62
0.8
71.8
32.8
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
40.7
-0.7
2.4
56.1
43.3

Associated Gene:

Gene:
TOR3A
Ensembl Gene ID:
ENSAPLG00000013573
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014144
11287767 - 11292457
4691