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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11300850_11302576_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11300850 - 11302576
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
GGTATGATAATG
Flanking Amino Acid:
SILAPLYQCCIIRVSTWNRL
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
41.2
-0.8
2.2
46.2
40.4

Associated Gene:

Gene:
FAM20B
Ensembl Gene ID:
ENSAPLG00000014023
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014613
11300618 - 11315309
14692