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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11302637_11304671_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11302637 - 11304671
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGCCAGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DDEGASKGKSCFGNPALDER
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.4
0.06
1.2
43.3
45.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
37.6
-1.4
3.1
45
45
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
FAM20B
Ensembl Gene ID:
ENSAPLG00000014023
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014613
11300618 - 11315309
14692