Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11304885_11307399_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11304885 - 11307399

Intron Length:

2515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TGGTGGCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAA

U12 Branch Point Sequence:

TCCTTGAAGATT

Flanking Amino Acid:

GRTYREGKLARWEYDESYCD

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

76.8

31.7

Major BPS

62.3

0.31

1.1

54.9

40.8

Major PPT

0.38

58.6

Minor 5ss

38.2

-1.3

3.4

55.2

Minor BPS

37.7

-0.8

2.3

54.2

42.5

Associated Gene:

Gene:

FAM20B

Ensembl Gene ID:

ENSAPLG00000014023

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014613

11300618 - 11315309

14692