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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11307572_11309742_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11307572 - 11309742
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTATTTTTATTT
Flanking Amino Acid:
EQLLGTFMTVGNNTCFYGKC
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.2
0.66
1
83.6
31
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
57.7
0.32
1.6
71.47
40.5

Associated Gene:

Gene:
FAM20B
Ensembl Gene ID:
ENSAPLG00000014023
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014613
11300618 - 11315309
14692