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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11312269_11314932_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11312269 - 11314932
Intron Length:
2664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTTTTTTGATT
Flanking Amino Acid:
GGQKVVFKPKRYARDYVVEG
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.3
0.61
0.9
69.9
34.6
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
66.5
0.6
1.1
75.74
35.5

Associated Gene:

Gene:
FAM20B
Ensembl Gene ID:
ENSAPLG00000014023
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014613
11300618 - 11315309
14692