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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11356966_11359160_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11356966 - 11359160
Intron Length:
2195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
AATTAGTTATTT
Flanking Amino Acid:
SAACQSNRQQVPANLMTFE*
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
46.2
-0.2
2.3
68.53
42.4

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649