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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11359253_11360438_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11359253 - 11360438
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTCCCATACCT
Flanking Amino Acid:
DLFLLTDSEKGNSYKFQAGN
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
74.6
0.55
0.8
74.1
29.8
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
62.9
0.48
1.9
86.79
38.5

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649