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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11360545_11366864_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11360545 - 11366864
Intron Length:
6320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
CTTGTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTGCTTGTATT
Flanking Amino Acid:
KSLKATERKHFKSTPSKNVS
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.3
75.9
35.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.1
0.77
0.8
81.1
35.5
Minor 5ss
42.5
-0.8
2.5
49.6
40.4
Minor BPS
48.2
-0
1.9
67.79
43.6

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649