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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11366958_11367639_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11366958 - 11367639
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGATTA
5'SS Class:
major
3'SS Sequence:
CCTTTCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTTCATTTACT
Flanking Amino Acid:
TLLKEGKKPTVASWTKYWVA
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.9
34.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78
0.63
0.8
70.2
35
Minor 5ss
43.7
-0.7
3.1
62
43.4
Minor BPS
66.5
0.6
1.9
86.74
38.3

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649