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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11367746_11369256_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11367746 - 11369256
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATCC
5'SS Class:
major
3'SS Sequence:
ATGCTCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTTTTACAC
Flanking Amino Acid:
NGYRGHMKASSSLESEDLAV
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
63
36.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.9
74.1
36
Minor 5ss
37.5
-1.4
3.3
51.7
45
Minor BPS
56.6
0.19
1.7
68.01
37.6

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649