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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11369335_11372867_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11369335 - 11372867
Intron Length:
3533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGAATCCAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
GTATATGTAATA
Flanking Amino Acid:
SEETSWPAFERNRLYHSLGP
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
58.9
0.2
1.1
51.7
42.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.8
-0.1
2.1
61.68
38.7

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649