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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11372923_11381332_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11372923 - 11381332
Intron Length:
8410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTGTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCGTTCTTATCT
Flanking Amino Acid:
SSTLSSGISIGSSDGSELSE
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
68.6
0.42
1.1
67.7
42.4
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
66.8
0.6
1.6
78.93
43.7

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649