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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11381485_11381834_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11381485 - 11381834
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGCATT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AATGTTGTAACA
Flanking Amino Acid:
GHRKCHSLGYNFIHKMNTAE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
75.5
40.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
85.7
0.8
0.6
80.5
31.5
Minor 5ss
42.4
-0.8
3
58.9
39.4
Minor BPS
48.5
-0.1
2
61.79
38.8

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649