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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11382716_11384776_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11382716 - 11384776
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTTCTTTAATG
Flanking Amino Acid:
LQKFVEDDNYKLSLKIEPGT
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82
0.72
0.9
78.2
33.9
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
71.6
0.54
1.3
67.55
40.8

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649