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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11396126_11401185_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11396126 - 11401185
Intron Length:
5060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAA
Flanking Amino Acid:
RVPPLALINEGPFKDCQQAK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
65.5
0.35
1.1
68.8
35.4
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
56.6
0.2
1.6
68.07
38.6

Associated Gene:

Gene:
ANGPTL1
Ensembl Gene ID:
ENSAPLG00000014572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015187
11395270 - 11405743
10474