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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11401380_11404275_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11401380 - 11404275
Intron Length:
2896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACCTTCTGATCT
Flanking Amino Acid:
NFFRNWDSYKKGFGNIDGEY
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71
35.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.8
0.65
0.9
73.2
35.7
Minor 5ss
43.5
-0.7
2.9
56.9
47.3
Minor BPS
50.4
0.09
1.7
66.4
44.4

Associated Gene:

Gene:
ANGPTL1
Ensembl Gene ID:
ENSAPLG00000014572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015187
11395270 - 11405743
10474