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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11411806_11415876_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11411806 - 11415876
Intron Length:
4071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCAAACTTAATC
Flanking Amino Acid:
PIFRLTKTWALLSRKDKATF
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
33.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.3
0.84
0.6
84
24.1
Minor 5ss
33.5
-1.9
3.2
44.3
43.6
Minor BPS
60.1
0.3
1.6
65.1
40.3

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649