About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11419814_11427576_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11419814 - 11427576
Intron Length:
7763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTATTTTAAAA
Flanking Amino Acid:
AVAFTRRFNHVSFWVVREIL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.1
25.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.6
88.7
20.7
Minor 5ss
38.8
-1.3
3
53.7
43.8
Minor BPS
61.9
0.37
1.4
68.54
37.9

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649