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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11427661_11433194_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11427661 - 11433194
Intron Length:
5534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTCAAAAAAA
Flanking Amino Acid:
VPVFKAIQPEELASCGWNKK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.8
0.69
0.8
72.9
37.4
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
45.3
-0.3
2.2
64.09
41.3

Associated Gene:

Gene:
RALGPS2
Ensembl Gene ID:
ENSAPLG00000014184
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014861
11356936 - 11446584
89649