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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_11516077_11516556_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11516077 - 11516556
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTGTCCTAATAT
Flanking Amino Acid:
KDSQMKSIISRLMAVEEELK
Intron Amino Acid Position:
1182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
70.2
0.45
1
62.7
43.1
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
48.8
-0
2.1
68.67
47.9

Associated Gene:

Gene:
RASAL2
Ensembl Gene ID:
ENSAPLG00000014584
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015237
11510989 - 11681862
170874